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实验室简介

 

Pathogens (such as coronavirus, norovirus, Leigonella pneumophila, nontuberculous mycobacteria, etc.) in engineered water systems and built environment frequently cause disease outbreaks and raise human health concerns. SHEN lab aims to tackle the challenges at the nexus of water, air, and public healthWe will understand pathogen abundance, persistence, transmission, and control across water and air for public health protection and safe water supply. 

First group lunch and happy birthday to Yiwen!

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Welcome Yihan Wang, Yiwen Zhu, and Li Qian to join the group!

Now we have everyone in Riverside! What a lovely team. Welcome!

Openings (PhD and postdoc positions are currently available!)

PhD and postdoc positions are available in the Department of Chemical and Environmental Engineering at University of California, Riverside under the supervision of Dr. Yun Shen. Dr. Shen’s work aims to provide Solutions for Health-Environment Nexus (SHEN). The research goal is to elucidate the transmission of pathogens across water and air and develop the control strategies accordingly. The prospective PhD/postdoc will work on one of the following projects:

 

  1. Develop control strategies for airborne pathogens. Elucidate mechanisms for aerosolization of coronavirus and other pathogens. 
  2. Investigate pathogen persistence, virulence, and infectivity under a variety of environmental conditions.
  3. Study the persistence and disinfection of viral vesichles in wastewater.
  4. Understand interplay between biofilms and novel anti-microbial materials.

The above projects are funded by NSF, EPA, or NIH. A combination of gene sequencing and bioinformatics, microscopic imaging and spectroscopy, and surface characterization tools will be applied in the future research. 


The PhD student would enroll the Fall semester 2022. Prospective highly motivated students with a B.S. or M.S. degree in Environmental Engineering, Biology/Microbiology, Bioengineering, Chemistry, Chemical Engineering, Material Science, Public Health, and other related fields are encouraged to apply. Candidates with research experiences in environmental microbiology, molecular biology, water treatment, aerosol science, or nanomaterials will be preferred but not mandatory. 


The prospective postdoc researcher can start anytime from now. Applicants should have a Ph.D. in a relevant engineering/science field. Postdoc candidates with a background in microbiology or related fields will be strongly encouraged. The position is expected to last for two year with continuation dependent on future funding.  


The PhD and postdoc candidates should also have good communication skills and be capable of working with a highly interdisciplinary and collaborative team. The candidates should be highly motivated with the ambition and commitment to lead a novel research project with broader impact. The applicant will have the opportunities to connect with a variety of researchers in different fields, the access to all the shared resources in the UC System, and multiple opportunities to attend domestic/international conferences/workshops.  


Interested individuals are encouraged to contact Dr. Yun Shen at
yun.shen@ucr.edu. A resume or CV including education background, research experiences, publication list, GPA, and other information should be provided. The contact information of references (advisors or research mentors) should also be provided if applicable. 

Solutions to Health-Environment Nexus (SHEN)

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Vesicle-Cloaked Virus Clusters as Emerging Pathogens: Will They Challenge Current Disinfection Paradigm? (PI)

National Institutes of Health, 2021



Novel Quantitative Methods for Indigenous Viruses in Wastewater: Improving the Assessment of Water Reuse Treatment Performance (co-PI)

United States Environmental Protection Agency, 2021



Electrospun Nanofibrous Air Filters for Coronavirus Control (PI)

National Science Foundation, 2020



Presence, Persistence, and Inactivation of Vesicle-Cloaked Rotavirus or Norovirus Clusters in Water (PI)

National Science Foundation, 2020



Interactions between Photoreactive 2D Nanomaterials and Biofilms. National Science Foundation (PI)

National Science Foundation, 2019

 

​Control of biofilms in engineered water systems 

Biofilms in engineered water systems can facilitate the accumulation, persistence, propagation, and release of pathogens. While disinfectants are commonly applied in engineered water systems, the biofilms can be resistant to the exposure of traditional disinfectants. Therefore, optimization of disinfection strategies and development of novel anti-microbial materials are needed. In this study, the mechanisms of how biofilms respond to disinfectants/anti-microbial materials will be elucidated. Specifically, the biofilm structural and mechanical properties in response to both traditional disinfectants and novel photoreactive anti-microbial nanomaterials will be evaluated. The genomics, transcriptomics, and proteomics tools will also be applied to explore the interactions between gene regulations, biofilm physical and chemical properties, and properties of disinfectants/anti-microbial materials. The outcome of this project will guide development of biofilm control strategies. Furthermore, the evaluation on the novel photoreactive anti-microbial materials can also provide insights in optimization of food processing facilities and medical apparatus.

Pathogen aerosolization in built environment and pathogen source tracking

​Opportunistic pathogens targeting in human respiratory tract, such as Legionella pneumophila, some non-tuberculous mycobacteria species, and Pseudomonas aeruginosa, are prevalent in drinking water distribution and home plumbing systems. These opportunistic pathogens can transfer from water to air and infect humans via inhalation during water use events. However, our knowledge on this pathogen aerosolization process is still very limited. Therefore, this study aims to identify the mechanisms and key factors (including pathogen physicochemical characteristics, water use patterns, ambient temperature, and disinfect exposure) determining pathogen aerosolization and viability. Different built environment settings that may produce a significant amount of aerosols from water, including the use of shower systems, swimming pools, therapy pools (in hospitals), humidifiers (in hospitals), and jetted hot pools (in hotels) will be studied. The source of pathogens in built environment will also be tracked by using the advanced gene sequencing tools. The results of this study will provide information for the optimization of home plumbing and HAVC system design.

Persistence and infectivity of environmental pathogens

​Dose-response relation and infectivity of pathogens have been studied to provide information for pathogen risk assessment and control. However, how the pathogen infection behaviors in response to environmental conditions is still largely unknown. In this research, the pathogen persistence (viability and recovery), infectivity (both in vivo and in vitro), and virulence (gene expression and toxin production) will be investigated under different environmental conditions (such as ambient air humidity, temperature, and disinfectant exposure). In addition, the biofilm formation ability of a certain pathogen in simulated human environment will also be studied.

Pathogen risks associated with water reuse practice

​There is a pressing need for water reuse due to global water scarcity. While most research is focused on potable water reuse, health risks caused by pathogens in reused water for non-potable use (e.g., irrigation, landscaping, and toilet flushing) have been largely overlooked. In this study, the pathogen transmission in water reclamation facilities and green buildings with on-site water reuse systems designed for non-potable water reuse (e.g., irrigation, landscaping, car washing, and toilet flushing) will be studied by both field studies and lab-scale setup.

Other interests

​Pathogen transmission and control in food industries and health facilities

 

 

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