The Jatropha Genome, Editor: Suguru Tsuchimoto; 2017, Springer International Publishing, DOI: 10.1007/978-3-319-49653-5; link.springer.com/book/10.1007%2F978-3-319-49653-5

Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.
Sato S., Hirakawa H., Isobe S., Watanabe A., Kato M., Kawashima K., Minami C., Muraki A., Nakazaki N., Takahashi C., Nakayama S., Kishida Y., Kohara M., Yamada M., Tsuruoka H., Sasamoto S., Tabata S., Aizu T., Toyoda A., Shin-I T., Minakuchi Y., Kohara Y., Fujiyama A., Tsuchimoto S., Kajiyama S., Makigano E., Ohmido N., Shibagaki N., Cartagena J.A., Wada N., Kohinata T., Atefeh A., Yuasa S., Matsunaga S., Fukui K. (2011)
DNA Research, 18, 65-76. doi: 10.1093/dnares/dsq030
www.kazusa.or.jp/jatropha_3.0/index.html

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species
OrthoVenn2：一个用于多物种全基因组直系同源基因簇比较和注释的在线工具）的原创性研究论文，发布了用于比较和分析全基因组直系同源基因簇并生成可视化结果的在线工具
orthovenn2.bioinfotoolkits.net/home

Mao-Sheng Chen#, Longjian Niu#, Mei-Li Zhao, Chuanjia Xu, Bang-Zhen Pan, Qiantang Fu, Yan-Bin Tao, Huiying He, Chunhui Hou*, Zeng-Fu Xu*. 2020. De novo genome assembly and Hi-C analysis reveal the association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas. GigaScience 9 (2): 1-12 (giaa009). DOI: doi.org/10.1093/gigascience/giaa009.

Chen MS; Niu L; Zhao ML; Xu C; Pan BZ; Fu Q; Tao YB; He H; Hou C; Xu ZF (2020): Supporting data for "De novo genome assembly and Hi-C analysis reveal the association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas". GigaScience Database. dx.doi.org/10.5524/100689

Sequence data download:
CNGB db.cngb.org/search/project/CNP0000449/
NCBI bioproject www.ncbi.nlm.nih.gov/bioproject/PRJNA596547
GigaScience Database gigadb.org/dataset/100689

Kancharla, N., Jalali, S., Narasimham, J.V., Nair, V., Yepuri, V., Thakkar, B., Reddy, V.B., Kuriakose, B., Madan, N., S, A. (2019). De Novo Sequencing and Hybrid Assembly of the Biofuel Crop Jatropha curcas L.: Identification of Quantitative Trait Loci for Geminivirus Resistance. Genes (Basel) 10 (1): 69. doi:10.3390/genes10010069

JCDB: jcdb.xtbg.ac.cn/
Jatropha curcas is an oil-bearing plant, and has seeds with high oil content (~ 40%). Several advantages, such as easy genetic transformation and short generation duration, have led to the emergence of J. curcas as a model for woody energy plants. With the development of high-throughput sequencing, the genome of Jatropha curcas has been sequenced by different groups and a mass of transcriptome data was released. How to integrate and analyze these omics data is crucial for functional genomics research on J. curcas. By establishing pipelines for processing novel gene identification, gene function annotation, and gene network construction, we systematically integrated and analyzed a series of J. curcas transcriptome data. Based on these data, we constructed a J. curcas database (JCDB), which not only includes general gene information, gene functional annotation, gene interaction networks, and gene expression matrices but also provides tools for browsing, searching, and downloading data, as well as online BLAST, the JBrowse genome browser, ID conversion, heatmaps, and gene network analysis tools. JCDB is the most comprehensive and well annotated knowledge base for J. curcas. We believe it will make a valuable contribution to the functional genomics study of J. curcas. The database is accessible at jcdb.xtbg.ac.cn.

Xuan Zhang#, Bang-Zhen Pan#, Maosheng Chen, Wen Chen, Jing Li, Zeng-Fu Xu* and Changning Liu*. 2019. JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants. BMC Genomics 20, 958. doi:10.1186/s12864-019-6356-z.

www.ncbi.nlm.nih.gov/bioproject/PRJNA279873
Wu P, et al. (2015) Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant. Plant Journal 81(5):810-821.

www.ncbi.nlm.nih.gov/bioproject/PRJNA63485
Wu P, et al. (2015) Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant. Plant Journal 81(5):810-821.

Mulpuri Sujatha, Nicolas Carels, Bahadur B, editors. Jatropha, Challenges for a New Energy Crop. Volume 3: A Sustainable Multipurpose Crop. Springer; 2018, in press. DOI: 10.1007/978-981-13-3104-6
www.springer.com/us/book/9789811331039

Jatropha, Challenges for a New Energy Crop: Volume 2: Genetic Improvement and Biotechnology; Editors: Bahadur, Bir, Sujatha, Mulpuri, Carels, Nicolas; 2013, Springer-Verlag New York, DOI: 10.1007/978-1-4614-4915-7; www.springer.com/us/book/9781461449140

Jatropha, Challenges for a New Energy Crop: Volume 1: Farming, Economics and Biofuel, Editors: Carels, Nicolas; Sujatha, Mulpuri; Bahadur, Bir; 2012, Springer-Verlag New York, DOI: 10.1007/978-1-4614-4806-8; www.springer.com/us/book/9781461448051

Ha, J., Shim, S., Lee, T., Kang, Y.J., Hwang, W.J., Jeong, H., Laosatit, K., Lee, J., Kim, S.K., Satyawan, D., Lestari, P., Yoon, M.Y., Kim, M.Y., Chitikineni, A., Tanya, P., Somta, P., Srinives, P., Varshney, R.K., Lee, S.-H. (2019). Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. Plant Biotechnology Journal 17 (2): 517-530. doi:10.1111/pbi.12995

Best Primers for Genes of Jatropha curcas: biodb.swu.edu.cn/qprimerdb/best-primers-ss

Published sequenced plant genomes www.plabipd.de/index.ep

The Gcorn plant database is a web-based database for retrieving and grasping relationships in gene function and evolution in 73 plants. It provides information on homologous genes at various virtual time points along with speciation in plants. The Gcorn plant database is available at www.plant.osakafu-u.ac.jp/∼kagiana/gcorn/p/.