•PMirP (Dongyu Zhao et al, Artificial Intelligence in Medicine, 2010)

      A pre-microRNA prediction webserver based on structure-sequence hybrid  

      features method.

•WikiCell (Dongyu Zhao et al, OMICS: A Journal of Integrative Biology, 2012)

      A Unified Resource Platform for Human Transcriptomics Research.

•PGAP-X (Yongbing Zhao#, Chen Sun#, Dongyu Zhao# et al, BMC Genomics, 2018) 

      A pan-genome analysis pipeline in bacterial genomics research.